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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35388045_35388478_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35388045 - 35388478
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTGCTTTATT
Flanking Amino Acid:
NGSSANSPYGIVPSSPTMAA
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
82.6
0.73
0.9
77.4
35.6
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
65.1
0.56
2.1
87.87
37.8

Associated Gene:

Gene:
EBF3
Ensembl Gene ID:
ENSAPLG00000012647
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013188
35385223 - 35428252
43030