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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35388665_35389872_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35388665 - 35389872
Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTAACACAGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GGGTTTCTAACA
Flanking Amino Acid:
VSETSQANDQGYSRNTSSVS
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
58.8
0.2
1
53.4
36.1
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
52.1
0.06
1.7
61.03
39

Associated Gene:

Gene:
EBF3
Ensembl Gene ID:
ENSAPLG00000012647
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013188
35385223 - 35428252
43030