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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35390051_35390725_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35390051 - 35390725
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATATCT
Flanking Amino Acid:
ALYGMPHNNQEIILKRAADI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.8
73.3
36.7
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
54.7
0.23
1.8
77.51
38.9

Associated Gene:

Gene:
EBF3
Ensembl Gene ID:
ENSAPLG00000012647
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013188
35385223 - 35428252
43030