About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35390792_35396377_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35390792 - 35396377
Intron Length:
5586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TGAAACATAACA
Flanking Amino Acid:
HPGDPERLPKEVLLKRAADL
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
86.2
0.81
0.7
85.6
29.2
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
50.3
0
1.8
64.7
40.4

Associated Gene:

Gene:
EBF3
Ensembl Gene ID:
ENSAPLG00000012647
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013188
35385223 - 35428252
43030