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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35396467_35418257_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35396467 - 35418257
Intron Length:
21791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTGTTTAAAT
Flanking Amino Acid:
KGAPGRFVYTALNEPTIDYG
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.6
0.55
1
66.1
45
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
63.6
0.5
1.9
81.87
39.5

Associated Gene:

Gene:
EBF3
Ensembl Gene ID:
ENSAPLG00000012647
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013188
35385223 - 35428252
43030