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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3541890_3542312_R

Intron Information:

Intron Rank:
149541
Intron Class:
major
Intron Phase:
Intron Coordinates:
3541890 - 3542312
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTTTATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.2
0.54
1
69.1
40.7
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
58.4
0.26
1.6
71.42
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027988
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021062
3541583 - 3552053
10471