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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35558142_35562287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35558142 - 35562287
Intron Length:
4146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
QLGQLLRQPGGSLVVVHFWA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
56.8
42.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
23.9
-3
3
21
37.4
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904