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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35565972_35570825_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35565972 - 35570825
Intron Length:
4854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGCTTAAACT
Flanking Amino Acid:
MKGSPKEPRCGFSKQMVEIL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
62.9
0.48
1.8
80.14
42.2

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904