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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35571157_35573906_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35571157 - 35573906
Intron Length:
2750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AATAACTGAGCT
Flanking Amino Acid:
ICPKAQKLEDRLKALINKAP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
77.6
0.62
0.8
73.2
31.7
Minor 5ss
38.2
-1.3
3.4
56.2
48
Minor BPS
47.5
-0.1
1.9
67.28
42.3

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904