About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35575085_35576161_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35575085 - 35576161
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAG
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTATTA
Flanking Amino Acid:
KQIIEIINNTGVDYETFDIL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
70.6
41.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.7
0.69
0.7
73.1
31.7
Minor 5ss
40.7
-1
2.5
42.2
44.7
Minor BPS
53.6
0.11
1.8
67.58
39.5

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904