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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35576202_35576281_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35576202 - 35576281
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TAAAGTTGAAGT
Flanking Amino Acid:
ETFDILEDEEVRQGLKTYSN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
79.8
35.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
84.3
0.77
0.7
84.8
30
Minor 5ss
35.1
-1.7
2.7
42.1
44.6
Minor BPS
43.4
-0.4
2.1
59.58
43.4

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904