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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35576375_35577782_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35576375 - 35577782
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
ATTTCTTTACAG
Flanking Amino Acid:
ELVGGLDIVKELKESGELLP
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
86
0.81
0.8
80
31.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
59.2
0.15
1.8
66.8
41

Associated Gene:

Gene:
GLRX3
Ensembl Gene ID:
ENSAPLG00000012790
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013343
35558065 - 35577968
19904