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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35636719_35641687_F

Intron Information:

Intron Rank:
151165
Intron Class:
major
Intron Phase:
Intron Coordinates:
35636719 - 35641687
Intron Length:
4969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TCGTTTTTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TCGTTTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
73.7
36.6
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.2
0.66
0.9
73.7
40.6
Minor 5ss
45.7
-0.5
2.6
65
40.2
Minor BPS
58.5
0.26
1.6
65.7
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040486
35636462 - 35642868
6407
ENSAPLT00000028667
35633027 - 35641868
8842
ENSAPLT00000018940
35635932 - 35641868
5937