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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35642514_35656777_F

Intron Information:

Intron Rank:
151172
Intron Class:
major
Intron Phase:
Intron Coordinates:
35642514 - 35656777
Intron Length:
14264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTTCCCTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
85.8
0.8
0.8
80.7
31.4
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
48.7
-0
3.5
84.59
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041950
35641889 - 35657631
15743