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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35656942_35658841_F

Intron Information:

Intron Rank:
151170
Intron Class:
major
Intron Phase:
Intron Coordinates:
35656942 - 35658841
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGTTGTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.3
0.61
0.9
70.8
39.8
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
44.6
-0.3
2.3
66.27
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038540
35641597 - 35659038
17442