About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35658631_35671323_F

Intron Information:

Intron Rank:
135750
Intron Class:
major
Intron Phase:
Intron Coordinates:
35658631 - 35671323
Intron Length:
12693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
GGTTTGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CATTATTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
75.5
0.57
0.9
69.5
41.6
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
46.3
-0.4
1.8
51.17
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023089
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025802
35657652 - 35671819
14168