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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35698914_35699010_F

Intron Information:

Intron Rank:
147958
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
35698914 - 35699010
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
TAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTCTGG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
44.8
-0.3
3.2
66.7
40
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
73.1
0.8
1.3
88.05
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029662
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033709
35693373 - 35699411
6039