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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3571859_3590067_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3571859 - 3590067
Intron Length:
18209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGGCGCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GGGCACTGACCG
Flanking Amino Acid:
GSHGSELRESRYYETGSIKP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
59.8
0.22
1.1
54.1
41.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
41.1
-0.8
1.8
40.76
42.4

Associated Gene:

Gene:
PAX2
Ensembl Gene ID:
ENSAPLG00000014579
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019177
3571327 - 3666454
95128