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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35765639_35769760_F

Intron Information:

Intron Rank:
126358
Intron Class:
major
Intron Phase:
Intron Coordinates:
35765639 - 35769760
Intron Length:
4122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGTAC
5'SS Class:
major
3'SS Sequence:
CTTTGTATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTCACTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
0.9
67.9
33.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
73.4
0.53
1
69.8
40.3
Minor 5ss
31.7
-2.1
3.2
37.5
41.8
Minor BPS
49.2
-0.2
1.9
59.07
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018077
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047997
35765472 - 35770732
5261