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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35791389_35791477_F

Intron Information:

Intron Rank:
142180
Intron Class:
major
Intron Phase:
Intron Coordinates:
35791389 - 35791477
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATGAT
5'SS Class:
major
3'SS Sequence:
CCTCTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.8
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
0.8
76.2
32.4
Minor 5ss
26.9
-2.7
3.5
39.1
46.7
Minor BPS
54.7
0.13
1.8
68.45
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026565
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033833
35789828 - 35791783
1956