Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35807062_35807687_R

Intron Information:

Intron Rank:

132253

Intron Class:

major

Intron Phase:

Intron Coordinates:

35807062 - 35807687

Intron Length:

626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

AATTTACTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TATCTCTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

78.2

0.63

0.9

70.5

39.4

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

69.6

0.61

1.3

75.44

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030980

35805543 - 35808131

2589