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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35863949_35866082_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35863949 - 35866082
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TGCAGTTTAACC
Flanking Amino Acid:
KLLEESKLSPRTTFKEFAEK
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
85.5
0.8
0.8
80.6
31.4
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
54.2
0.11
1.8
63.39
42.3

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852