About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35869460_35871334_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35869460 - 35871334
Intron Length:
1875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGAAGC
5'SS Class:
major
3'SS Sequence:
GTATACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATTCTTTAATG
Flanking Amino Acid:
HFRDMLLERGVSAFSTWEKE
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.8
44.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.2
0.5
1
65
40.8
Minor 5ss
32
-2.1
3.2
34.7
41.5
Minor BPS
74.2
0.62
1.2
70.85
36.4

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852