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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35871471_35875377_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35871471 - 35875377
Intron Length:
3907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AATTTCTGACCT
Flanking Amino Acid:
DDLSIKIKRNKTEDSQAADQ
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69
0.43
1.1
69.4
34.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
58.1
0.33
1.7
76.27
40

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852