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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35875448_35881227_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35875448 - 35881227
Intron Length:
5780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAACTAAC
5'SS Class:
major
3'SS Sequence:
TATTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCAAATCTAACT
Flanking Amino Acid:
PHKRKLEAAATDKSVSSCPG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
75.1
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.7
0.76
0.7
82.3
29.2
Minor 5ss
43.3
-0.7
2.6
54.5
36.8
Minor BPS
48.5
-0
1.9
67.42
42.9

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852