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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35894271_35917740_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35894271 - 35917740
Intron Length:
23470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
GGTTCGAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATGG
Flanking Amino Acid:
KIPVLTSPFPGSASRVDAHL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63.5
0.3
1.1
55.6
43.7
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
49
-0.2
2.2
62.99
44.6

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852