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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3590266_3617139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3590266 - 3617139

Intron Length:

26874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GAGTTCTGAACA

Flanking Amino Acid:

DTVPSVSSINRIIRTKVQQP

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

70.5

38.9

Major BPS

82.1

0.8

71.6

36.4

Major PPT

84.3

0.77

0.8

76.2

37.8

Minor 5ss

29.5

-2.3

3.4

38.5

46.7

Minor BPS

62.1

0.38

1.4

66.15

39.8

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019177

3571327 - 3666454

95128

ENSAPLT00000015263

3571711 - 3666454

94744