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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35917930_35930536_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35917930 - 35930536
Intron Length:
12607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTGACAATAAAA
Flanking Amino Acid:
TVVLAPQLIPGGCQNSLKPV
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
77.9
0.63
0.8
72.1
32.6
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
47.7
-0.1
2
64.19
41.2

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852