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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35931731_35932337_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35931731 - 35932337
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGACG
5'SS Class:
major
3'SS Sequence:
TCCCCTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
HHRRQLLPGQWIFGGHHSPV
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
67
44.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.2
0.57
0.7
72.7
25.5
Minor 5ss
38.1
-1.3
3.1
49.5
46.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TCERG1L
Ensembl Gene ID:
ENSAPLG00000012399
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012907
35863744 - 35932595
68852