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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35941824_35955965_R

Intron Information:

Intron Rank:
134123
Intron Class:
major
Intron Phase:
Intron Coordinates:
35941824 - 35955965
Intron Length:
14142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGGTCTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
43.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
70.4
0.46
1
67
43.6
Minor 5ss
29.2
-2.4
2.5
25.2
36.6
Minor BPS
47.7
-0.1
1.9
67.5
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019433
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047664
35941748 - 35956649
14902