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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35984609_35985263_R

Intron Information:

Intron Rank:
154027
Intron Class:
major
Intron Phase:
Intron Coordinates:
35984609 - 35985263
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTTTTT
5'SS Class:
major
3'SS Sequence:
GTTGGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATAAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
34.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.2
0.45
0.9
61.7
44.5
Minor 5ss
39.4
-1.2
3.3
57.9
46.8
Minor BPS
54.3
0.13
1.8
68.12
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030359
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048146
35979323 - 35986923
7601