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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35985384_35986408_R

Intron Information:

Intron Rank:
154028
Intron Class:
major
Intron Phase:
Intron Coordinates:
35985384 - 35986408
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCTACTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.5
0.42
1
65.9
39.5
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
68.1
0.55
1.5
72.11
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030359
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048146
35979323 - 35986923
7601