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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35997087_36000947_R

Intron Information:

Intron Rank:
134422
Intron Class:
major
Intron Phase:
Intron Coordinates:
35997087 - 36000947
Intron Length:
3861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.5
29.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84
0.77
0.8
78.4
34.7
Minor 5ss
36.9
-1.5
3
49.9
46.4
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019584
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027780
35996246 - 36001614
5369