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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35997087_36017000_R

Intron Information:

Intron Rank:
134424
Intron Class:
major
Intron Phase:
Intron Coordinates:
35997087 - 36017000
Intron Length:
19914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
73
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84
0.77
0.8
78.4
34.7
Minor 5ss
31.2
-2.2
3.4
41.6
45.4
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019584
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033813
35996636 - 36017197
20562