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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36010011_36010572_R

Intron Information:

Intron Rank:
141755
Intron Class:
major
Intron Phase:
Intron Coordinates:
36010011 - 36010572
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGAGTGG
5'SS Class:
major
3'SS Sequence:
TTTATTACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.1
50.7
42.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83
0.74
0.8
74.9
39.7
Minor 5ss
28.6
-2.4
3.5
37.3
47.4
Minor BPS
53.1
0.08
1.9
67.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023624
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045087
36009834 - 36016976
7143