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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36010011_36014846_R

Intron Information:

Intron Rank:
141751
Intron Class:
major
Intron Phase:
Intron Coordinates:
36010011 - 36014846
Intron Length:
4836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTAG
5'SS Class:
major
3'SS Sequence:
TTTATTACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.5
37.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83
0.74
0.8
74.9
39.7
Minor 5ss
30.7
-2.2
3.2
37.4
47.3
Minor BPS
53.1
0.08
1.9
67.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023624
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028254
36009834 - 36016976
7143