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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36010703_36014846_R

Intron Information:

Intron Rank:
141756
Intron Class:
major
Intron Phase:
Intron Coordinates:
36010703 - 36014846
Intron Length:
4144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTAG
5'SS Class:
major
3'SS Sequence:
CCTGTGCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTGCTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.5
37.7
Major BPS
74.2
0.6
1
67
39.4
Major PPT
75.7
0.58
0.9
67.9
37.7
Minor 5ss
30.7
-2.2
3.2
37.4
47.3
Minor BPS
52.9
0.17
1.6
68
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023624
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045087
36009834 - 36016976
7143