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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36014387_36014846_R

Intron Information:

Intron Rank:
141753
Intron Class:
major
Intron Phase:
Intron Coordinates:
36014387 - 36014846
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTAG
5'SS Class:
major
3'SS Sequence:
GAATGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
ATGACATGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.5
37.7
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
73
0.52
1
65.7
44.9
Minor 5ss
30.7
-2.2
3.2
37.4
47.3
Minor BPS
47.5
-0.3
1.8
53
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023624
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036710
36014056 - 36016976
2921