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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36014920_36016770_R

Intron Information:

Intron Rank:
141752
Intron Class:
major
Intron Phase:
Intron Coordinates:
36014920 - 36016770
Intron Length:
1851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CATCTCAGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.1
0.79
0.7
78.2
30.6
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
43.7
-0.4
1.9
60.2
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023624
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045087
36009834 - 36016976
7143
ENSAPLT00000036710
36014056 - 36016976
2921
ENSAPLT00000028254
36009834 - 36016976
7143