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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36076612_36079963_R

Intron Information:

Intron Rank:
128842
Intron Class:
major
Intron Phase:
Intron Coordinates:
36076612 - 36079963
Intron Length:
3352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TATTACCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTATATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
64.9
42.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.7
0.9
73.5
36.4
Minor 5ss
31.8
-2.1
3
37.6
47.1
Minor BPS
53
0.17
1.9
76.04
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016455
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035766
36075885 - 36080516
4632