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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36083294_36083391_F

Intron Information:

Intron Rank:
133443
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
36083294 - 36083391
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACTGCCT
5'SS Class:
weak_major
3'SS Sequence:
CCTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCACATTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
50.9
45.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82.7
0.74
0.8
79.8
31.8
Minor 5ss
32
-2.1
3.5
40
45.6
Minor BPS
50.9
0.11
1.9
69.89
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021784
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037606
36083107 - 36084262
1156
ENSAPLT00000025181
36083107 - 36094500
11394