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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36083509_36094105_F

Intron Information:

Intron Rank:
133444
Intron Class:
major
Intron Phase:
Intron Coordinates:
36083509 - 36094105
Intron Length:
10597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTACTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCTTCCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
77.9
0.63
0.8
71.6
32.6
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
67.9
0.64
1.7
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021784
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025181
36083107 - 36094500
11394