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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36118188_36130572_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36118188 - 36130572
Intron Length:
12385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTATTTTATTT
Flanking Amino Acid:
KGAIDEDVAEADIISTVEFN
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.9
75.8
38.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
49.8
0.07
1.6
64.26
41

Associated Gene:

Gene:
PPP2R2D
Ensembl Gene ID:
ENSAPLG00000006225
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025803
36116993 - 36143745
26753
ENSAPLT00000006463
36117875 - 36144359
26485