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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36138304_36139513_F

Intron Information:

Intron Rank:
5
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
36138304 - 36139513
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AAAACCTTCCCAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTACCAAAACC
Flanking Amino Acid:
WHLEITDRSFNIVDIKPANM
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
62
0.27
1
51.1
42.6
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
58
0.23
2
76.5
39.5

Associated Gene:

Gene:
PPP2R2D
Ensembl Gene ID:
ENSAPLG00000006225
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025803
36116993 - 36143745
26753
ENSAPLT00000006463
36117875 - 36144359
26485