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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36151447_36151550_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36151447 - 36151550
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCAAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAAAA
Flanking Amino Acid:
WSSRPENIPPKEFLFKHPRR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
58.1
0.18
1
57.2
36.6
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
68.3
0.57
1.7
77.18
39.5

Associated Gene:

Gene:
BNIP3
Ensembl Gene ID:
ENSAPLG00000005950
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006169
36151293 - 36154687
3395