Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36151658_36153155_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36151658 - 36153155

Intron Length:

1498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAATC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTGTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

TATGGTTTGATA

Flanking Amino Acid:

HSSGEKNSFQSEEDFLERRK

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

81.4

30.4

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

81.2

0.7

0.8

80.2

31.9

Minor 5ss

37.4

-1.4

3.2

51.9

44.9

Minor BPS

49.3

-0

1.8

62.11

38.9

Associated Gene:

Gene:

BNIP3

Ensembl Gene ID:

ENSAPLG00000005950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006169

36151293 - 36154687

3395