Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36154249_36154650_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36154249 - 36154650

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGCCG

5'SS Class:

major

3'SS Sequence:

TTACACCGAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTACAC

U12 Branch Point Sequence:

TGTTCCCGATTA

Flanking Amino Acid:

RHSPQEDNLQGSWVELHFSS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.64

1.1

57.9

46.7

Major BPS

0.35

72.7

31.8

Major PPT

60.8

0.24

1.1

55.9

39.5

Minor 5ss

30.6

-2.2

3.2

31.8

42.1

Minor BPS

48.2

-0.1

66.11

40.1

Associated Gene:

Gene:

BNIP3

Ensembl Gene ID:

ENSAPLG00000005950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006169

36151293 - 36154687

3395