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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3619393_3640594_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3619393 - 3640594

Intron Length:

21202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGGA

5'SS Class:

major

3'SS Sequence:

GTGTGCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

GTGGTGCTAACT

Flanking Amino Acid:

SNGEKRKRDEDVSEGSVPNG

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

42.4

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

70.8

0.47

62.7

39.7

Minor 5ss

27.2

-2.6

3.6

37.6

47.2

Minor BPS

44.3

-0.3

2.3

64.53

45.9

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015263

3571711 - 3666454

94744

ENSAPLT00000019177

3571327 - 3666454

95128