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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36206983_36207362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36206983 - 36207362
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTCTTAATT
Flanking Amino Acid:
ALLSEERNELLKRLREAESQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.6
0.76
0.8
80.6
36.5
Minor 5ss
33.5
-1.9
3
41.5
39.2
Minor BPS
76.3
0.9
1.1
84.73
36.1

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696