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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36208540_36208982_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36208540 - 36208982
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
QQNIIDELSKTLETAGYVKS
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696